STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDLipoprotein releasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (226 aa)    
Predicted Functional Partners:
TDE_2039
Lipoprotein releasing system, permease protein, putative; Identified by similarity to SP:P75958; match to protein family HMM PF02687.
 
  0.988
TDE_2041
Lipoprotein releasing system, permease protein, putative; Identified by match to protein family HMM PF02687.
 
 0.987
TDE_2283
Permease, putative; Identified by match to protein family HMM PF02687.
   0.958
ftsY
Signal recognition particle-docking protein FtsY; Identified by match to protein family HMM PF00448; match to protein family HMM TIGR00064.
 
   
 0.950
TDE_2036
ATPase, AAA family; Identified by match to protein family HMM PF00004; match to protein family HMM PF02151; match to protein family HMM PF02861; Belongs to the ClpA/ClpB family.
  
  
 0.844
TDE_2037
ATP:guanido phosphotransferase domain protein; Identified by match to protein family HMM PF00217.
       0.837
TDE_2044
Lipoprotein, putative.
       0.836
TDE_2038
UVR domain protein; Identified by match to protein family HMM PF02151.
       0.835
TDE_2042
Hypothetical protein; Identified by Glimmer2; putative.
       0.779
TDE_2045
Hypothetical protein; Identified by Glimmer2; putative.
       0.779
Your Current Organism:
Treponema denticola
NCBI taxonomy Id: 243275
Other names: T. denticola ATCC 35405, Treponema denticola ATCC 35405, Treponema denticola str. ATCC 35405
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