Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Phosphotransferase | TDE_2619 | TDE_2618 | TDE_2619 | 3',5'-nucleoside bisphosphate phosphatase; PHP domain protein; Identified by similarity to OMNI:NTL01NM00595; match to protein family HMM PF02231 | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | 0.826 |
| Phosphotransferase | TDE_2620 | TDE_2618 | TDE_2620 | 3',5'-nucleoside bisphosphate phosphatase; PHP domain protein; Identified by similarity to OMNI:NTL01NM00595; match to protein family HMM PF02231 | Conserved hypothetical protein; Uncharacterized protein; Identified by similarity to GP:19714407 | 0.678 |
| Phosphotransferase | TDE_2621 | TDE_2618 | TDE_2621 | 3',5'-nucleoside bisphosphate phosphatase; PHP domain protein; Identified by similarity to OMNI:NTL01NM00595; match to protein family HMM PF02231 | Uncharacterized protein; Identified by Glimmer2; putative | 0.655 |
| TDE_2162 | TDE_2619 | TDE_2162 | TDE_2619 | NOL1NOP2sun family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | 0.891 |
| TDE_2162 | ftsJ | TDE_2162 | TDE_1968 | NOL1NOP2sun family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family | 23S rRNA (uridine2552-2'-O)-methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit | 0.903 |
| TDE_2162 | ksgA | TDE_2162 | TDE_1080 | NOL1NOP2sun family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits | 0.957 |
| TDE_2162 | map | TDE_2162 | TDE_1733 | NOL1NOP2sun family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family | Methionine aminopeptidase, type i; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed | 0.496 |
| TDE_2162 | trmB | TDE_2162 | TDE_1130 | NOL1NOP2sun family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family | Trna (guanine-n7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA | 0.850 |
| TDE_2619 | Phosphotransferase | TDE_2619 | TDE_2618 | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | 3',5'-nucleoside bisphosphate phosphatase; PHP domain protein; Identified by similarity to OMNI:NTL01NM00595; match to protein family HMM PF02231 | 0.826 |
| TDE_2619 | TDE_2162 | TDE_2619 | TDE_2162 | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | NOL1NOP2sun family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family | 0.891 |
| TDE_2619 | TDE_2620 | TDE_2619 | TDE_2620 | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | Conserved hypothetical protein; Uncharacterized protein; Identified by similarity to GP:19714407 | 0.704 |
| TDE_2619 | TDE_2621 | TDE_2619 | TDE_2621 | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | Uncharacterized protein; Identified by Glimmer2; putative | 0.674 |
| TDE_2619 | ftsJ | TDE_2619 | TDE_1968 | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | 23S rRNA (uridine2552-2'-O)-methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit | 0.763 |
| TDE_2619 | ksgA | TDE_2619 | TDE_1080 | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits | 0.761 |
| TDE_2619 | maf | TDE_2619 | TDE_2348 | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids | 0.689 |
| TDE_2619 | map | TDE_2619 | TDE_1733 | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | Methionine aminopeptidase, type i; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed | 0.652 |
| TDE_2619 | nnrE | TDE_2619 | TDE_1370 | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | Adp-dependent nad(p)h-hydrate dehydratase / nad(p)h-hydrate epimerase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hyd [...] | 0.667 |
| TDE_2619 | trmB | TDE_2619 | TDE_1130 | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | Trna (guanine-n7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA | 0.735 |
| TDE_2620 | Phosphotransferase | TDE_2620 | TDE_2618 | Conserved hypothetical protein; Uncharacterized protein; Identified by similarity to GP:19714407 | 3',5'-nucleoside bisphosphate phosphatase; PHP domain protein; Identified by similarity to OMNI:NTL01NM00595; match to protein family HMM PF02231 | 0.678 |
| TDE_2620 | TDE_2619 | TDE_2620 | TDE_2619 | Conserved hypothetical protein; Uncharacterized protein; Identified by similarity to GP:19714407 | Rna methyltransferase, trma family, putative; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family | 0.704 |
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