Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TP_0473 | TP_0474 | TP_0473 | TP_0474 | Predicted coding region TP0473; Hypothetical protein; identified by Glimmer; putative. | Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 51.03; identified by sequence similarity; putative. | 0.586 |
TP_0473 | uvrC | TP_0473 | TP_0472 | Predicted coding region TP0473; Hypothetical protein; identified by Glimmer; putative. | Excinuclease ABC, subunit C (uvrC); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.566 |
TP_0474 | TP_0473 | TP_0474 | TP_0473 | Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 51.03; identified by sequence similarity; putative. | Predicted coding region TP0473; Hypothetical protein; identified by Glimmer; putative. | 0.586 |
TP_0474 | uvrC | TP_0474 | TP_0472 | Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 51.03; identified by sequence similarity; putative. | Excinuclease ABC, subunit C (uvrC); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.439 |
uvrC | TP_0473 | TP_0472 | TP_0473 | Excinuclease ABC, subunit C (uvrC); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Predicted coding region TP0473; Hypothetical protein; identified by Glimmer; putative. | 0.566 |
uvrC | TP_0474 | TP_0472 | TP_0474 | Excinuclease ABC, subunit C (uvrC); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | Conserved hypothetical protein; Similar to GB:AE000783 percent identity: 51.03; identified by sequence similarity; putative. | 0.439 |