STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0191Conserved hypothetical protein; Identified by Glimmer2; putative. (222 aa)    
Predicted Functional Partners:
VC_1939
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.770
VC_0192
Transcriptional regulator, AraC/XylS family; Similar to GP:3294250; identified by sequence similarity; putative.
 
     0.636
VC_2479
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
   
 
 0.601
VC_1083
Hypothetical protein; Identified by Glimmer2; putative.
    
   0.521
VC_A0189
Response regulator; Similar to PID:1736859 PID:1736868; identified by sequence similarity; putative.
    
   0.521
VC_0190
DNA helicase II; Similar to GB:M87049 SP:P03018 GB:D00069 GB:X00225 GB:X00738; identified by sequence similarity; putative.
      
 0.518
VC_A0527
Conserved hypothetical protein; Identified by Glimmer2; putative.
      
 0.518
VC_2478
Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
   
  
 0.512
VC_1197
Hypothetical protein; Identified by Glimmer2; putative.
    
   0.443
VC_0194
Gamma-glutamyltranspeptidase; Similar to GB:AL123456; identified by sequence similarity; putative.
       0.402
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.