STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0301Hypothetical protein; Identified by Glimmer2; putative. (68 aa)    
Predicted Functional Partners:
VC_0299
DNA polymerase III, epsilon subunit, putative; Similar to GB:AE000657; identified by sequence similarity; putative.
       0.773
VC_0300
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.773
VC_0302
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.545
acsA
acetyl-CoA synthase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
       0.476
VC_A0301
Oxidoreductase, short-chain dehydrogenase/reductase family; Similar to PID:887852 GB:U00096 PID:1773222 PID:2160242 PID:2367175; identified by sequence similarity; putative.
      
 0.450
VC_1059
Oxidoreductase, short-chain dehydrogenase/reductase family; Similar to SP:P31808 GB:U17433 PID:603171 GB:U00096 PID:1742066; identified by sequence similarity; putative.
      
 0.432
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.