STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0586Carbonic anhydrase, putative; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (222 aa)    
Predicted Functional Partners:
VC_0058
Carbonic anhydrase, family 3; Similar to GB:AE000657; identified by sequence similarity; putative.
  
 
 0.958
VC_0587
Sulfate permease family protein; Similar to PID:1001216 PID:1001268; identified by sequence similarity; putative.
 
 
 0.808
VC_A0540
Formate transporter 1, putative; Similar to SP:P21501 PID:147154 GB:U00096 PID:1651428 PID:1651435; identified by sequence similarity; putative.
  
  
 0.756
VC_1695
Formate transporter 1, putative; Similar to SP:P21501 PID:147154 GB:U00096 PID:1651428 PID:1651435; identified by sequence similarity; putative.
  
  
 0.745
VC_A0274
Carbonic anhydrase; Similar to GP:2773324; identified by sequence similarity; putative.
     
 0.728
VC_A0077
Sulfate permease family protein; Similar to GB:AL009126; identified by sequence similarity; putative.
 
 
 0.690
VC_1582
Conserved hypothetical protein; Identified by Glimmer2; putative; Belongs to the UPF0753 family.
  
    0.657
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.617
gpt
Xanthine-guanine phosphoribosyltransferase; Acts on guanine, xanthine and to a lesser extent hypoxanthine; Belongs to the purine/pyrimidine phosphoribosyltransferase family. XGPT subfamily.
   
  
 0.617
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.602
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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