STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_0655Acetyltransferase, putative; Similar to SP:P45473 PID:606096 GB:U00096 PID:1789546; identified by sequence similarity; putative. (183 aa)    
Predicted Functional Partners:
VC_0654
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.870
argA
N-acetylglutamate synthase; Similar to SP:P08205 GB:Y00492 PID:581038 PID:882710 GB:U00096; identified by sequence similarity; putative.
    
 0.793
VC_A0319
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.693
VC_A0482
Conserved hypothetical protein; Identified by Glimmer2; putative.
   
   0.693
VC_A0486
Hypothetical protein; Identified by Glimmer2; putative.
   
   0.693
VC_0657
Ribosomal-protein-alanine acetyltransferase; Similar to GB:L42023 SP:P44305 PID:1004120 PID:1221913 PID:1204268; identified by sequence similarity; putative.
  
  
 0.605
VC_0656
DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
       0.570
VC_0653
c-di-GMP phosphodiesterase A-related protein; Similar to GP:3659618; identified by sequence similarity; putative.
       0.531
phnW
2-aminoethylphosphonate:pyruvate aminotransferase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.
  
  
  0.528
VC_1217
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.524
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.