STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadJFatty oxidation complex, alpha subunit; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. (724 aa)    
Predicted Functional Partners:
fadI
Fatty oxidation complex, beta subunit; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
 0.999
VC_1740
Oxidoreductase, acyl-CoA dehydrogenase family; Similar to GP:4902957; identified by sequence similarity; putative.
 
 0.999
VC_2231
Oxidoreductase, acyl-CoA dehydrogenase family; Similar to PID:1208978 PID:984577 GB:U00096 SP:Q47146 PID:1552791; identified by sequence similarity; putative.
 
 0.999
fadA
Fatty oxidation complex, beta subunit; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
 0.999
VC_A0690
acetyl-CoA acetyltransferase; Similar to PID:1262448; identified by sequence similarity; putative; Belongs to the thiolase-like superfamily. Thiolase family.
 0.999
fadB
Fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
 
0.990
VC_A0691
acetoacetyl-CoA reductase; Similar to PID:576783 SP:P50203; identified by sequence similarity; putative.
  
 0.970
VC_A0829
acetyl-CoA synthase; Similar to GB:AE000782; identified by sequence similarity; putative.
  
 0.955
VC_0026
Zinc-binding alcohol dehydrogenase; Similar to GB:M80458 SP:P26646 PID:145173 PID:606193 GB:U00096; identified by sequence similarity; putative.
  
 0.948
VC_A0688
Polyhydroxyalkanoic acid synthase; Similar to GB:U04848 GB:L37761 PID:443736 PID:576785; identified by sequence similarity; putative.
   
 
 0.938
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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