STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1265Hypothetical protein; Identified by Glimmer2; putative. (461 aa)    
Predicted Functional Partners:
VC_1266
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.982
VC_1267
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.977
VC_1264
Iron-regulated protein A, putative; Similar to SP:P12608 PID:154525; identified by sequence similarity; putative.
 
  
 0.967
VC_0608
iron(III) ABC transporter, periplasmic iron-compound-binding protein; Similar to PID:1651916; identified by sequence similarity; putative.
 
  
 0.688
VC_2289
Thiamin biosynthesis lipoprotein ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
   
    0.555
VC_0609
iron(III) ABC transporter, permease protein; Similar to PID:1001414 PID:1001407; identified by sequence similarity; putative.
  
    0.548
VC_0364
Bacterioferritin-associated ferredoxin; Similar to GB:M27176 SP:P13655 PID:145408 PID:606271 GB:U00096; identified by sequence similarity; putative.
  
    0.491
VC_1268
Conserved hypothetical protein; Identified by Glimmer2; putative.
       0.487
VC_A0891
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.447
VC_0283
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.436
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.