STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_1391Multidrug transporter, putative; Similar to GB:AL009126; identified by sequence similarity; putative. (468 aa)    
Predicted Functional Partners:
VC_1410
Multidrug resistance protein VceA; Similar to GP:3378278; identified by sequence similarity; putative.
 
 
 0.860
VC_1634
Multidrug resistance protein; Similar to SP:P28246 GB:X63703 PID:41065 PID:424052 GB:U00096; identified by sequence similarity; putative.
  
   
 0.764
VC_0069
Multidrug resistance protein, putative; Similar to GB:L10328 SP:P31462 PID:290558 GB:U00096 PID:1790146; identified by sequence similarity; putative.
  
   
 0.673
VC_2761
Multidrug resistance protein; Similar to GB:U00096 PID:1742733 PID:1742743 PID:1787950; identified by sequence similarity; putative.
  
   
 0.610
VC_1390
Transcriptional regulator, LysR family; Similar to PID:1493807; identified by sequence similarity; putative; Belongs to the LysR transcriptional regulatory family.
       0.574
VC_0705
Chorismate mutase/prephenate dehydratase; Similar to GB:L42023 SP:P43900 PID:1006481 PID:1221267 PID:1205390; identified by sequence similarity; putative.
  
 
 0.560
VC_0696
Chorismate mutase/prephenate dehydrogenase; Similar to SP:Q02287 GB:M74135 GB:X60420 PID:415010 PID:43345; identified by sequence similarity; putative.
    
 0.540
VC_A0267
Multidrug resistance protein D; Similar to GB:X78969 PID:474915; identified by sequence similarity; putative.
  
   
 0.522
VC_1304
Fumarate hydratase, class I, putative; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.478
cry2
Deoxyribodipyrimidine photolyase, putative; Has no photolyase activity.
       0.471
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.