STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0096Hypothetical protein; Identified by Glimmer2; putative. (407 aa)    
Predicted Functional Partners:
VC_0414
Hypothetical protein; Identified by Glimmer2; putative.
   
 0.785
VC_A0095
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.770
VC_A0812
Leucine aminopeptidase-related protein; Similar to PID:1694931; identified by sequence similarity; putative.
  
     0.717
VC_0157
Alkaline serine protease; Similar to GB:M25499 SP:P16588 PID:155251; identified by sequence similarity; putative; Belongs to the peptidase S8 family.
 
  
 0.716
VC_1952
Chitinase; Similar to GP:3851166; identified by sequence similarity; putative.
  
     0.625
vcc
Collagenase; Possesses gelatinolytic activity; Belongs to the peptidase M9A family.
  
  
 0.582
VC_A0700
Chitodextrinase; Similar to GP:3928775; identified by sequence similarity; putative.
  
     0.558
VC_1073
Chitinase, putative; Similar to PID:1698444; identified by sequence similarity; putative.
  
     0.546
hap
Hemagglutinin/protease; May play a role in the pathogenesis of cholera. Hap nicks and activates the A subunit of cholera enterotoxin and related enterotoxins.
  
  
 0.545
VC_A0094
Conserved hypothetical protein; Identified by Glimmer2; putative.
     
 0.539
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.