STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VC_A0348Conserved hypothetical protein; Identified by Glimmer2; putative. (92 aa)    
Predicted Functional Partners:
VC_A0349
relB protein; Similar to SP:P07007 GB:X02405 PID:42700 GB:U00096 PID:1742559; identified by sequence similarity; putative.
       0.786
VC_A0324
DNA-damage-inducible protein J; Similar to PID:984582 GB:U00096 SP:Q47150 PID:1786420; identified by sequence similarity; putative.
   
   0.768
VC_0132
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.672
VC_1997
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.646
VC_A0754
Lipase-related protein; Similar to SP:P19515 PID:488853; identified by sequence similarity; putative.
  
     0.630
VC_A0561
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.622
VC_1157
Response regulator; Similar to PID:643672; identified by sequence similarity; putative.
  
     0.585
VC_2346
Smp protein, putative; Similar to SP:P18838 GB:M30784 GB:X03046 PID:432633 PID:436177; identified by sequence similarity; putative.
  
     0.555
VC_2335
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.554
VC_A0350
Lipoprotein Blc; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
       0.541
Your Current Organism:
Vibrio cholerae
NCBI taxonomy Id: 243277
Other names: V. cholerae O1 biovar El Tor str. N16961, Vibrio cholerae El Tor N16961, Vibrio cholerae O1 biovar El Tor str. N16961, Vibrio cholerae O1 biovar eltor str. N16961, Vibrio cholerae serotype O1 biotype El Tor strain N16961, Vibrio cholerae serotype O1 biotype ElTor strain N16961
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.