STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msbATransport ATP-binding protein msbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (584 aa)    
Predicted Functional Partners:
lpxK
Tetraacyldisaccharide 4`-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
  
 0.934
CV_0449
Probable ABC transport system ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1127.
    
0.915
rfbU
Lipopolysaccharide biosynthesis protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0438.
  
 
 0.770
CV_2981
Probable cystine transport ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1126.
    
0.743
CV_0448
Probable ABC transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0767.
 
 
 0.705
CV_4400
Probable colicin V secretion ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2274.
 
 
  
0.704
CV_0068
Probable colicin V secretion atp-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2274/TC:3.A.1.110.2.
 
 
  
0.699
hlyB
Identified by sequence similarity; putative; ORF located using Blastx/COG2274/TC:3.A.1.109.1.
 
 
  
0.693
cydC
ATP-binding/permease fusion ABC transporter; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2274/TC:3.A.1.109.1.
 
 
  
0.685
CV_2184
Probable ABC transport protein, msbA family; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1132.
  
 
0.677
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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