STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_1109Probable ATP-sensitive inward rectifier potassium channel related transmembrane protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1226. (296 aa)    
Predicted Functional Partners:
CV_2871
Probable hemagglutinin; Identified by sequence similarity; putative; ORF located using Blastx/COG3210.
  
     0.593
CV_3165
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx.
  
     0.555
CV_3166
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0056.
  
     0.540
CV_0278
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0563.
 
      0.518
CV_2869
Probable hemagglutinin-related protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG3210.
  
     0.490
acpA
Acid phosphatase; Identified by sequence similarity; putative; ORF located using Blastx.
  
     0.473
CV_1235
Probable lipoprotein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx/COG0790.
  
     0.467
CV_4128
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1434.
 
     0.447
CV_3526
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG1858.
  
     0.439
CV_3902
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0457.
  
     0.429
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.