STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CV_2394Probable cell division ftsk transmembrane protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1674/TC:3.A.12.1.2; Belongs to the FtsK/SpoIIIE/SftA family. (964 aa)    
Predicted Functional Partners:
ftsQ
Cell division transmembrane protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.
   
 
 0.816
parB
Chromosome partitioning protein ParB; Identified by sequence similarity; putative; ORF located using Blastx/COG1475; Belongs to the ParB family.
  
   
 0.815
xerC
Integrase/recombinase XerC; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
   
 0.705
CV_0311
Probable RTX (repeat in structural toxin); Identified by sequence similarity; putative; ORF located using Blastx/COG2931.
    
 
 0.688
CV_0464
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
    
 
 0.688
CV_0516
Probable calcium binding hemolysin; Identified by sequence similarity; putative; ORF located using Blastx/COG2931/TC:1.C.11.1.4.
    
 
 0.688
parA
Chromosome partitioning protein, ParA family ATPase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1192/TC:8.A.3.3.2.
  
  
 0.688
CV_1737
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/Blastx.
    
 
 0.688
CV_2968
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
    
 
 0.688
CV_3475
Hypothetical protein.
    
 
 0.688
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.