STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gstAGlutathione S-transferase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0625; Belongs to the GST superfamily. (233 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase (alpha subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.752
rpoC
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.691
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.690
rpoZ
DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
   0.685
CV_0905
Probable glutathione S-transferase family protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0625.
 
   
 0.676
CV_2426
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG2135; Belongs to the SOS response-associated peptidase family.
 
     0.608
lysS
lysyl-tRNA synthetase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1190; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.587
kptA
Conserved hypothetical protein; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
       0.564
CV_0766
Probable multidrug resistance protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0477/TC:2.A.1.3.2; Belongs to the major facilitator superfamily.
      
 0.551
CV_0768
Probable outer membrane multidrug resistance lipoprotein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1538.
      
 0.551
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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