STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsCD-ribose transport system permease protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1172/TC:3.A.1.2.1; Belongs to the binding-protein-dependent transport system permease family. (312 aa)    
Predicted Functional Partners:
CV_0377
Probable ribose ABC transporter, substrate binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1879/TC:3.A.1.2.1.
 0.999
rbsB
Ribose ABC transporter, substrate binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1879/TC:3.A.1.2.1.
 0.999
rbsA
D-ribose transport system ATP-binding protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 0.999
CV_2522
Probable ribose ABC transporter, substrate binding protein; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1879/TC:3.A.1.2.1.
 0.995
rbsD
D-ribose transport system permease protein; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
 
  
 0.994
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.966
mglA
Sugar ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG1129.
 
     0.925
CV_0208
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/COG2199.
 
      0.831
scrR
Sucrose operon repressor; Identified by sequence similarity; putative; ORF located using Blastx/TC:3.A.1.2.1.
 
  
 0.784
gltK
Glutamate/aspartate transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx/COG0765/TC:3.A.1.3.4.
      
 0.737
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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