STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcAArginine deiminase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG2235. (410 aa)    
Predicted Functional Partners:
arcB
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
 
 0.999
arcC
Carbamate kinase; Identified by sequence similarity; putative; ORF located using Blastx/COG0549; Belongs to the carbamate kinase family.
 
  
 0.994
argI
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. OTCase family.
 
 0.992
arcD
Arginine/ornithine antiporter; Identified by sequence similarity; putative; ORF located using Blastx/COG0531/TC:2.A.3.2.3.
 
  
 0.931
argH
Argininosuccinate lyase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG0165.
     
 0.924
argG
Argininosuccinate synthase; Identified by sequence similarity; putative; ORF located using Blastx/COG0137; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
 0.923
argE
Acetylornithine deacetylase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG0624.
  
 
 0.923
adi
Arginine decarboxylase; Identified by sequence similarity; putative; ORF located using GeneMark/Blastx/COG1982.
    
 0.838
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
    
  0.825
aruF
Arginine N-succinyltransferase; Identified by sequence similarity; putative; ORF located using Glimmer/GeneMark/Blastx/COG3138.
     
 0.821
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.