STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cooSIICarbon-monoxide dehydrogenase, catalytic subunit; CODH oxidizes carbon monoxide coupled, via CooF, to the reduction of a hydrogen cation by a hydrogenase (possibly CooH). (636 aa)    
Predicted Functional Partners:
acsB
CO dehydrogenase/acetyl-CoA synthase complex, beta subunit; Identified by match to protein family HMM PF03598; match to protein family HMM TIGR00316.
 
 0.997
cooF1
Iron-sulfur cluster-binding protein CooF; Identified by similarity to OMNI:AF0950; match to protein family HMM PF00037.
 
  
 0.987
acsD
CO dehydrogenase/acetyl-CoA synthase, iron-sulfur protein; Identified by similarity to SP:Q07341.
  
 0.978
acsC
Carbon monoxide dehydrogenase corrinoid/iron-sulfur protein, gamma subunit; Identified by similarity to SP:Q50539; match to protein family HMM PF03599; match to protein family HMM PF04060.
 
  
 0.977
CHY_2194
Putative tungsten formylmethanofuran dehydrogenase, subunit E; Identified by match to protein family HMM PF02663.
  
  
  0.937
cooSV
Carbon-monoxide dehydrogenase, catalytic subunit; Identified by similarity to GP:15826756; match to protein family HMM PF03063; match to protein family HMM TIGR01702.
  
  
0.933
cooF2
Iron-sulfur cluster-binding protein CooF; Identified by similarity to SP:P31894; match to protein family HMM PF00037.
 
  
 0.918
fdhA
NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing; Selenoprotein; identified by match to protein family HMM PF00037; match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; match to protein family HMM TIGR01591.
    
 0.914
dsrA
Dissimilatory sulfite reductase alpha subunit; Identified by similarity to GP:902747; match to protein family HMM PF01077; match to protein family HMM TIGR02064.
     
 0.911
CHY_1713
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
    
 0.910
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.