STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_0219Putative O-antigen polymerase; Identified by match to protein family HMM PF04932. (801 aa)    
Predicted Functional Partners:
CHY_0641
Hypothetical protein; Identified by Glimmer2; putative.
  
   
 0.673
CHY_0171
Putative membrane protein; Identified by match to protein family HMM PF00595.
  
     0.601
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.579
CHY_0535
Conserved hypothetical protein; Identified by similarity to PIR:A83808.
  
     0.562
CHY_0218
Doubled CXXCH domain protein; Identified by match to protein family HMM TIGR01905.
       0.522
CHY_1140
Conserved hypothetical protein; Identified by similarity to GB:AAM25009.1.
  
     0.519
CHY_0407
Putative membrane protein; Identified by similarity to GB:AAM24201.1.
  
     0.489
CHY_1508
Conserved hypothetical protein; Identified by similarity to GB:AAM24777.1.
  
     0.484
CHY_2483
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01TT0656.
  
     0.470
CHY_1059
Bacterial sugar transferase family protein; Identified by match to protein family HMM PF02397.
  
  
 0.466
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.