STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_0230Probable proton-coupled thiamine transporter YuaJ; Identified by similarity to GB:AAM25641.1; match to protein family HMM TIGR02357. (171 aa)    
Predicted Functional Partners:
CHY_0231
Thiamine pyrophosphokinase; Identified by similarity to GB:AAO35797.1; match to protein family HMM PF04263; match to protein family HMM TIGR01378.
     
 0.858
CHY_0232
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
CHY_2277
Cobalt ABC transporter, permease protein; Identified by match to protein family HMM PF02361; match to protein family HMM TIGR02454.
  
  
 0.552
CHY_1642
Identified by match to protein family HMM PF02632.
   
  
 0.489
CHY_0228
Hypothetical protein; Identified by Glimmer2; putative.
       0.442
CHY_0229
ATP-dependent RNA helicase, DEAD box family; Identified by similarity to SP:P23304; match to protein family HMM PF00270; match to protein family HMM PF00271; Belongs to the DEAD box helicase family.
       0.442
CHY_0233
Putative cytochrome c; Identified by similarity to GP:3628767.
       0.435
birA
BirA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.415
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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