STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_0964Flagellar motor protein MotB; Identified by similarity to SP:P28612; match to protein family HMM PF00691. (266 aa)    
Predicted Functional Partners:
motA
Chemotaxis motA protein; Identified by similarity to SP:P28611; match to protein family HMM PF01618.
 
 0.999
flgK
Identified by similarity to SP:P39810; match to protein family HMM PF00460; match to protein family HMM PF06429; match to protein family HMM TIGR02492.
 
  
 0.973
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P75935; match to protein family HMM PF06429; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
 
  
 0.972
fliG
Flagellar motor switch protein FliG; Identified by match to protein family HMM PF01706; match to protein family HMM TIGR00207.
 
  
 0.966
flgG
Flagellar basal-body rod protein FlgG; Identified by similarity to SP:P23446; match to protein family HMM PF00460; match to protein family HMM PF06429.
 
 
 0.956
fliM
Flagellar motor switch protein FliM; Identified by similarity to SP:P23453; match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397.
 
  
 0.951
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
  
 0.949
CHY_1014
Flagellar hook-basal body rod protein; Identified by similarity to SP:P23446; match to protein family HMM PF00460; match to protein family HMM PF06429.
 
 
 0.947
CHY_0999
Flagellar hook assembly protein; Identified by match to protein family HMM PF03963.
 
  
 0.945
fliD
Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
  
 0.944
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.