Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| CHY_0945 | dinB | CHY_0945 | CHY_1651 | Identified by match to protein family HMM PF00149. | DNA polymerase IV - AMBIGUITY; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.534 |
| CHY_0945 | dnaN | CHY_0945 | CHY_2709 | Identified by match to protein family HMM PF00149. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.599 |
| CHY_0945 | pcrA | CHY_0945 | CHY_1099 | Identified by match to protein family HMM PF00149. | ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073. | 0.572 |
| CHY_0945 | polA | CHY_0945 | CHY_1650 | Identified by match to protein family HMM PF00149. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.998 |
| CHY_0945 | recA | CHY_0945 | CHY_1166 | Identified by match to protein family HMM PF00149. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.886 |
| CHY_0945 | topA | CHY_0945 | CHY_1794 | Identified by match to protein family HMM PF00149. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.760 |
| CHY_1165 | CHY_1697 | CHY_1165 | CHY_1697 | Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family. | Putative prophage LambdaCh01, repressor protein; Identified by similarity to SP:P03035; match to protein family HMM PF00717; match to protein family HMM PF01381. | 0.539 |
| CHY_1165 | recA | CHY_1165 | CHY_1166 | Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.925 |
| CHY_1165 | recX | CHY_1165 | CHY_1167 | Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family. | Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. | 0.691 |
| CHY_1697 | CHY_1165 | CHY_1697 | CHY_1165 | Putative prophage LambdaCh01, repressor protein; Identified by similarity to SP:P03035; match to protein family HMM PF00717; match to protein family HMM PF01381. | Identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; Belongs to the CinA family. | 0.539 |
| CHY_1697 | dinB | CHY_1697 | CHY_1651 | Putative prophage LambdaCh01, repressor protein; Identified by similarity to SP:P03035; match to protein family HMM PF00717; match to protein family HMM PF01381. | DNA polymerase IV - AMBIGUITY; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | 0.795 |
| CHY_1697 | polA | CHY_1697 | CHY_1650 | Putative prophage LambdaCh01, repressor protein; Identified by similarity to SP:P03035; match to protein family HMM PF00717; match to protein family HMM PF01381. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.610 |
| CHY_1697 | recA | CHY_1697 | CHY_1166 | Putative prophage LambdaCh01, repressor protein; Identified by similarity to SP:P03035; match to protein family HMM PF00717; match to protein family HMM PF01381. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.933 |
| CHY_1697 | recX | CHY_1697 | CHY_1167 | Putative prophage LambdaCh01, repressor protein; Identified by similarity to SP:P03035; match to protein family HMM PF00717; match to protein family HMM PF01381. | Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. | 0.450 |
| CHY_1697 | topA | CHY_1697 | CHY_1794 | Putative prophage LambdaCh01, repressor protein; Identified by similarity to SP:P03035; match to protein family HMM PF00717; match to protein family HMM PF01381. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.464 |
| dinB | CHY_0945 | CHY_1651 | CHY_0945 | DNA polymerase IV - AMBIGUITY; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | Identified by match to protein family HMM PF00149. | 0.534 |
| dinB | CHY_1697 | CHY_1651 | CHY_1697 | DNA polymerase IV - AMBIGUITY; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | Putative prophage LambdaCh01, repressor protein; Identified by similarity to SP:P03035; match to protein family HMM PF00717; match to protein family HMM PF01381. | 0.795 |
| dinB | dnaN | CHY_1651 | CHY_2709 | DNA polymerase IV - AMBIGUITY; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.991 |
| dinB | lexA | CHY_1651 | CHY_1378 | DNA polymerase IV - AMBIGUITY; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.813 |
| dinB | pcrA | CHY_1651 | CHY_1099 | DNA polymerase IV - AMBIGUITY; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. | ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580; match to protein family HMM TIGR01073. | 0.404 |
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