STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acsDCO dehydrogenase/acetyl-CoA synthase, iron-sulfur protein; Identified by similarity to SP:Q07341. (310 aa)    
Predicted Functional Partners:
acsB
CO dehydrogenase/acetyl-CoA synthase complex, beta subunit; Identified by match to protein family HMM PF03598; match to protein family HMM TIGR00316.
 
 0.999
acsC
Carbon monoxide dehydrogenase corrinoid/iron-sulfur protein, gamma subunit; Identified by similarity to SP:Q50539; match to protein family HMM PF03599; match to protein family HMM PF04060.
 
 0.999
acsE
5-methyltetrahydrofolate corrinoid/iron sulfur protein methyltransferase; Identified by match to protein family HMM PF00809.
 
 
 0.999
CHY_1233
Identified by match to protein family HMM PF02219; Belongs to the methylenetetrahydrofolate reductase family.
  
 0.999
CHY_1224
Iron-sulfur cluster binding protein; Identified by match to protein family HMM PF00111.
 
 
 
 0.991
fhs
Formate--tetrahydrofolate ligase; Identified by match to protein family HMM PF01268; Belongs to the formate--tetrahydrofolate ligase family.
    
 0.985
cooSI
Carbon-monoxide dehydrogenase, catalytic subunit; CODH oxidizes carbon monoxide coupled, via CooF, to the reduction of a hydrogen cation by a hydrogenase (possibly CooH).
  
 0.980
cooSII
Carbon-monoxide dehydrogenase, catalytic subunit; CODH oxidizes carbon monoxide coupled, via CooF, to the reduction of a hydrogen cation by a hydrogenase (possibly CooH).
  
 0.978
cooSIV
Carbon-monoxide dehydrogenase, catalytic subunit; Identified by similarity to GP:15826756; match to protein family HMM PF03063; match to protein family HMM TIGR01702.
  
 0.978
cooC2
CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC; Identified by similarity to GP:20467243; match to protein family HMM PF01656.
 
  
 0.971
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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