STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHY_2211Type II restriction endonuclease; Recognizes the double-stranded unmethylated sequence GATC and cleaves before G-1; Belongs to the type II restriction enzyme DpnII family. (315 aa)    
Predicted Functional Partners:
CHY_2213
DNA adenine methylase; Identified by similarity to SP:P34720; match to protein family HMM PF02086; match to protein family HMM TIGR00571.
    0.988
CHY_2212
Putative DNA methylase; Identified by match to protein family HMM PF01170; match to protein family HMM PF01555; Belongs to the N(4)/N(6)-methyltransferase family.
 
   
 0.962
aroKB
Shikimate kinase/3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.
  
  
 0.531
CHY_2210
Conserved domain protein; Identified by similarity to GB:AAM24969.1.
  
    0.527
CHY_2214
Molybdopterin oxidoreductase; Identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.450
CHY_2209
Radical SAM domain protein; Identified by similarity to GB:AAM24970.1; match to protein family HMM PF04055.
       0.407
CHY_2215
Putative transporter; Identified by match to protein family HMM PF03547.
  
    0.405
Your Current Organism:
Carboxydothermus hydrogenoformans
NCBI taxonomy Id: 246194
Other names: C. hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans Z-2901, Carboxydothermus hydrogenoformans str. Z-2901
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