STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK70997.1Identified by match to protein family HMM PF03109. (439 aa)    
Predicted Functional Partners:
ABK76083.1
Cyclase/dehydrase; Identified by match to protein family HMM PF03364.
  
 
 0.790
ABK73467.1
Cyclase/dehydrase; Identified by match to protein family HMM PF03364.
  
 
 0.759
ABK69701.1
Transcriptional regulator, XRE family protein; Identified by match to protein family HMM PF01381.
  
    0.703
ABK74798.1
Conserved hypothetical protein.
 
     0.677
ABK71811.1
Hydrolase, alpha/beta fold family protein; Identified by match to protein family HMM PF00561.
  
  
 0.670
ABK70869.1
Conserved hypothetical protein.
       0.609
ABK69875.1
Acyltransferase; Identified by match to protein family HMM PF01553.
 
    0.576
ABK72669.1
Anion-transporting ATPase; Identified by match to protein family HMM PF02374.
  
    0.565
ABK71139.1
Ion-transporting ATPase; Identified by match to protein family HMM PF02374.
  
    0.533
ABK73438.1
Conserved hypothetical protein.
  
     0.509
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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