STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdcIndole-3-pyruvate decarboxylase; Decarboxylates branched-chain and aromatic alpha-keto acids to aldehydes. (555 aa)    
Predicted Functional Partners:
ilvE
Branched-chain amino acid aminotransferase; Catalyzes the reversible transfers of an amino group from glutamate to the alpha-ketoacid of the respective amino acid in the final step in the biosynthesis of branchedchain amino acids. The amino acids can be ranked in the following order with respect to their efficiency as amino donor: Leu > Ile > Val. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
  
 0.807
fbaA
Fructose-bisphosphate aldolase, class II; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
  
  
 0.654
ABK73839.1
Alcohol dehydrogenase, iron-containing; Identified by match to protein family HMM PF00465.
  
 
 0.643
ABK75946.1
Zinc-binding alcohol dehydrogenase family protein; Identified by match to protein family HMM PF00107; match to protein family HMM TIGR02822.
 
 
 
 0.608
ABK71581.1
Alcohol dehydrogenase; Identified by match to protein family HMM PF00107.
 
 
 
 0.605
ABK69640.1
NAD-dependent alcohol dehydrogenase; Identified by match to protein family HMM PF00107.
   
 
 0.605
serC
Phosphoserine aminotransferase, putative; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
   
  
 0.605
ABK72487.1
Alcohol dehydrogenase; Identified by match to protein family HMM PF00107.
 
 
 
 0.604
ABK72883.1
Alcohol dehydrogenase; Identified by match to protein family HMM PF00107.
 
 
 
 0.602
ABK74114.1
alpha-methylacyl-CoA racemase; Identified by match to protein family HMM PF02515; Belongs to the CoA-transferase III family.
  
    0.590
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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