STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK69686.1Putative membrane protein; Identified by match to protein family HMM PF03699. (1003 aa)    
Predicted Functional Partners:
ABK74188.1
PDZ domain family protein.
 
    0.708
ABK70869.1
Conserved hypothetical protein.
 
    0.642
ABK73134.1
DEAD/DEAH box helicase; Identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF04851; match to protein family HMM PF08148.
  
    0.476
pepN
Identified by match to protein family HMM PF01433; match to protein family HMM TIGR02412.
 
    0.468
ABK72779.1
Hypothetical protein; Identified by Glimmer2; putative; Belongs to the WXG100 family.
  
    0.464
ABK70459.1
Conserved hypothetical protein.
  
    0.461
ABK75894.1
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.461
ABK72913.1
Septum formation initiator subfamily protein, putative; Identified by match to protein family HMM PF04417; match to protein family HMM PF04977.
 
    0.453
whiB2
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (By similarity); Belongs to the WhiB family.
  
    0.446
ABK74795.1
Transcriptional regulator, MerR family protein.
  
    0.415
Your Current Organism:
Mycolicibacterium smegmatis
NCBI taxonomy Id: 246196
Other names: M. smegmatis MC2 155, Mycobacterium smegmatis MC2 155, Mycolicibacterium smegmatis MC2 155
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.