STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katG1Catalase-peroxidase 1; Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity. May play a role in the intracellular survival of mycobacteria (739 aa)    
Predicted Functional Partners:
sodA
Superoxide dismutase [Mn]; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family
     
 0.961
sodC
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the Cu-Zn superoxide dismutase family
     
 0.949
MSMEG_6636
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems
     
 0.910
nat
annotation not available
     
 0.907
MSMEG_6383
annotation not available
  
  
 0.906
MSMEG_5815
annotation not available
     
 0.904
MSMEG_0276
annotation not available
     
 0.902
MSMEG_0455
annotation not available
     
 0.902
MSMEG_0900
annotation not available
     
 0.902
MSMEG_1158
annotation not available
     
 0.902
Your Current Organism:
Mycobacterium smegmatis MC2155
NCBI taxonomy Id: 246196
Other names: M. smegmatis str. MC2 155, Mycobacterium smegmatis MC2 155, Mycobacterium smegmatis MC2155, Mycobacterium smegmatis str. MC2 155, Mycobacterium smegmatis strain MC2 155
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