STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_2295Putative membrane protein; Identified by similarity to GB:AAS95298.1. (731 aa)    
Predicted Functional Partners:
MXAN_3847
Putative transporter; Identified by similarity to SP:P45522; match to protein family HMM PF00999.
     
 0.806
MXAN_1323
Putative membrane protein; Identified by similarity to GB:AAU27061.1.
   
  
 0.805
MXAN_2292
Putative lipoprotein.
       0.546
MXAN_2293
Conserved hypothetical protein; Identified by similarity to PIR:T29112; match to protein family HMM PF04672.
       0.546
MXAN_2294
Hypothetical protein; Identified by Glimmer2; putative.
       0.546
MXAN_3260
Putative membrane protein.
      
 0.546
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
   
    0.471
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
   
    0.469
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
    0.438
MXAN_0606
Transporter, small conductance mechanosensitive ion channel (MscS) family; Identified by match to protein family HMM PF00924.
     
 0.433
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.