STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_2688Conserved hypothetical protein; Identified by similarity to GB:CAB58329.1; match to protein family HMM PF07940. (612 aa)    
Predicted Functional Partners:
MXAN_3259
Identified by match to protein family HMM PF01522.
 
  
 0.867
MXAN_2689
Lipopolysaccharide biosynthesis protein; Identified by match to protein family HMM PF00984; match to protein family HMM PF02737; match to protein family HMM PF03446; match to protein family HMM PF03720; match to protein family HMM PF03721; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
    0.723
MXAN_3262
Glycosyltransferase 1 family protein; Identified by similarity to SP:O06204.
 
     0.693
nla6
Sigma-54 dependent DNA-binding reponse regulator Nla6; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM TIGR01199.
   
  
 0.648
MXAN_1101
UDP-N-acetylglucosamine 2-epimerase; Identified by match to protein family HMM PF02350; match to protein family HMM TIGR00236; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
    0.646
MXAN_3233
Conserved hypothetical protein; Identified by similarity to GB:AAM23573.1.
 
    0.605
MXAN_5319
Tetratricopeptide repeat protein; Identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721.
  
     0.594
MXAN_2638
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.578
MXAN_1162
Putative lipoprotein.
  
     0.575
MXAN_3231
Conserved hypothetical protein; Identified by similarity to GB:AAR35335.1.
 
    0.575
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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