STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_3786Hypothetical protein; Identified by Glimmer2; putative. (493 aa)    
Predicted Functional Partners:
MXAN_2989
ATPase, AAA family; Identified by match to protein family HMM PF00004; match to protein family HMM PF07728.
 
   
 0.788
MXAN_3785
Hypothetical protein; Identified by Glimmer2; putative.
       0.658
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
  
    0.498
MXAN_3497
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.495
MXAN_3783
Transferase hexapeptide repeat family protein; Identified by match to protein family HMM PF00132.
       0.490
rumA
23S rRNA (uracil-5-)-methyltransferase RumA; Identified by similarity to SP:P55135; match to protein family HMM PF02390; match to protein family HMM PF05958; match to protein family HMM TIGR00479; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
  
    0.486
MXAN_7321
Transcriptional regulator, AfsR/DnrI/RedD family; Identified by match to protein family HMM PF03704.
  
    0.486
MXAN_4155
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.484
MXAN_2638
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.464
MXAN_3788
Hypothetical protein; Identified by Glimmer2; putative.
       0.463
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.