STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_6911TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715. (664 aa)    
Predicted Functional Partners:
MXAN_3644
Isochorismatase; Identified by similarity to SP:P45743; match to protein family HMM PF00550; match to protein family HMM PF00857.
 
  
 0.663
tonB-3
Ferric siderophore transporter, periplasmic energy transduction protein TonB; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 0.655
MXAN_3618
Non-ribosomal peptide synthetase; Identified by similarity to GB:AAC80285.1; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733.
  
  
 0.645
tonB-2
Ferric siderophore transporter, periplasmic energy transduction protein TonB; Identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352.
 
 
 0.640
MXAN_6845
TonB-dependent receptor; Identified by match to protein family HMM PF00593; match to protein family HMM PF07715; match to protein family HMM TIGR01352.
  
 
 0.615
hemS
Hemin transport protein HemS; Identified by similarity to SP:Q56990; match to protein family HMM PF05171.
 
  
 0.610
MXAN_3639
Iron-chelator utilization protein; Identified by similarity to SP:Q56646; match to protein family HMM PF04954; match to protein family HMM PF08021.
  
  
 0.578
hemU
Hemin ABC transporter, permease protein; Identified by match to protein family HMM PF01032; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.521
MXAN_3645
2,3-dihydroxybenzoate-AMP ligase; Identified by similarity to SP:P40871; match to protein family HMM PF00501; match to protein family HMM TIGR02275.
 
  
 0.508
tonB
Ferric siderophore transporter, periplasmic energy transduction protein TonB; Identified by similarity to GB:AAF04082.1; match to protein family HMM PF03544; match to protein family HMM TIGR01352.
  
 
 0.500
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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