STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MXAN_7292Conserved hypothetical protein. (312 aa)    
Predicted Functional Partners:
MXAN_7290
Hypothetical protein; Identified by Glimmer2; putative.
       0.566
MXAN_7291
Conserved hypothetical protein.
       0.566
MXAN_0563
LysM domain protein; Identified by match to protein family HMM PF01476.
  
     0.547
crm2
CRISPR-associated protein Crm2; Identified by match to protein family HMM TIGR01872; match to protein family HMM TIGR02577.
 
     0.504
MXAN_7182
Conserved hypothetical protein.
  
     0.470
MXAN_7280
Putative CRISPR-associated protein Crm3.
 
     0.470
cmr1
CRISPR-associated RAMP protein Cmr1; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01894.
 
     0.458
MXAN_7288
Conserved hypothetical protein.
       0.417
MXAN_7289
RNA polymerase sigma-70 factor, ECF subfamily; Identified by match to protein family HMM PF04542; match to protein family HMM TIGR02937; Belongs to the sigma-70 factor family. ECF subfamily.
       0.417
devR
Fruiting body developmental protein R (CRISPR-associated); CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA) (By similarity).
  
     0.408
Your Current Organism:
Myxococcus xanthus
NCBI taxonomy Id: 246197
Other names: M. xanthus DK 1622, Myxococcus xanthus DK 1622
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.