STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_6220Hypothetical protein; Identified by glimmer; putative. (398 aa)    
Predicted Functional Partners:
CUS_6221
RNA polymerase sigma factor, sigma-70 family; Identified by match to protein family HMM TIGR02937.
       0.774
CUS_5198
Phage/plasmid primase, P4 family, C-terminal domain protein.
 
     0.671
CUS_6222
Sigma-70 region 2; Identified by match to protein family HMM PF04542; Belongs to the sigma-70 factor family.
 
     0.595
CUS_6223
Hypothetical protein; Identified by glimmer; putative.
       0.511
CUS_6219
Hypothetical protein.
       0.486
CUS_7359
Peptidase, M50 family; Identified by match to protein family HMM PF02163.
  
     0.469
CUS_5786
Conserved domain protein.
  
     0.437
CUS_8013
Conserved domain protein.
  
     0.402
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.