STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUS_8029ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (281 aa)    
Predicted Functional Partners:
CUS_8028
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
    0.948
CUS_8027
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
    0.918
CUS_5905
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
    0.784
CUS_8030
Conserved domain protein.
       0.705
CUS_7293
ABC-2 type transporter; Identified by match to protein family HMM PF01061.
  
  0.629
CUS_8074
Putative membrane protein.
  
  0.629
CUS_5422
Conserved domain protein; Overlaps another CDS with the same product name.
   
  0.620
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.594
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
    
   0.591
CUS_7916
Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.
 
    0.577
Your Current Organism:
Ruminococcus albus 8
NCBI taxonomy Id: 246199
Other names: R. albus 8, Ruminococcus albus str. 8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.