STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SPO1463TRAP dicarboxylate transporter, DctM subunit; Identified by match to protein family HMM PF06808. (445 aa)    
Predicted Functional Partners:
SPO1464
TRAP dicarboxylate transporter, DctQ subunit, putative.
 
     0.909
SPO1465
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
 
     0.888
SPO2545
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by similarity to SP:P37735; match to protein family HMM PF03480.
 
     0.755
SPO2573
Bacterial extracellular solute-binding protein, family 7; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.660
SPO1721
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480; match to protein family HMM TIGR00787.
 
     0.581
SPO1474
Tautomerase, putative; Belongs to the 4-oxalocrotonate tautomerase family.
  
     0.578
SPO2433
TRAP dicarboxylate transporter, DctP subunit, putative; Identified by match to protein family HMM PF03480.
 
  
 0.548
SPO1469
3-ketosteroid dehydrogenase, putative; Identified by similarity to GB:AAF19054.1; match to protein family HMM PF00890.
  
    0.498
SPO1466
Opine dehydrogenase, putative; Identified by similarity to SP:Q44297; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
 
     0.463
dctP
TRAP dicarboxylate transporter, DctP subunit, putative; Solute-binding protein that binds 3,4-dihydroxybenzoate and 3-hydroxybenzoate (in vitro). Probably part of a tripartite ATP-independent periplasmic (TRAP) transport system that mediates solute transport into the cytoplasm.
 
     0.449
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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