STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO1970Identified by match to protein family HMM PF00300. (218 aa)    
Predicted Functional Partners:
SPO1971
Identified by match to protein family HMM PF00378.
  
  
 0.583
SPO3393
Hypothetical protein; Identified by similarity to GB:BAC68979.1.
  
     0.530
SPO1972
Nodulation protein N; Identified by similarity to SP:P25200; match to protein family HMM PF01575.
  
    0.509
SPO0404
Identified by match to protein family HMM PF00300.
  
     0.470
SPO0552
Phosphoglycerate mutase family protein.
  
     0.441
SPO1963
Identified by match to protein family HMM PF00300.
  
     0.414
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
  
  
 0.411
SPO1957
Oxidoreductase, short chain dehydrogenase/reductase family; Identified by similarity to GB:AAR05249.1; match to protein family HMM PF00106.
 
     0.400
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.