STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPO3356Hypothetical protein; Identified by similarity to GB:BAB50697.1. (127 aa)    
Predicted Functional Partners:
ccoO-1
Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to protein family HMM PF02433; match to protein family HMM TIGR00781.
  
 
 0.958
soxE
Diheme cytochrome c SoxE; Identified by match to protein family HMM PF00034.
  
 
 0.898
ccoQ-1
Cytochrome c oxidase, cbb3-type, subunit IV; Identified by similarity to GB:AAB02558.1; match to protein family HMM PF05545.
  
  
 0.849
SPO3521
fixH protein, putative; Identified by similarity to SP:P18397.
 
 
 0.818
SPO3357
Transcriptional regulator, LysR family; Identified by match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
 
     0.684
petB
Ubiquinol--cytochrome c reductase, cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.556
soxX
Monoheme cytochrome c SoxX; Identified by similarity to GB:CAB94379.1; match to protein family HMM PF00034.
  
 
 0.553
SPO1125
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.553
SPO1127
Identified by match to protein family HMM PF00034.
  
 
 0.553
SPO1515
Cytochrome c550, putative; Identified by similarity to GB:AAC79658.1.
  
 
 0.553
Your Current Organism:
Ruegeria pomeroyi
NCBI taxonomy Id: 246200
Other names: R. pomeroyi DSS-3, Ruegeria pomeroyi DSS-3, Ruegeria pomeroyi str. DSS-3, Ruegeria pomeroyi strain DSS-3, Silicibacter pomeroyi DSS-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.