STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NFA_35210Putative muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (367 aa)    
Predicted Functional Partners:
NFA_35230
Putative muconolactone delta-isomerase.
 
 
 0.982
NFA_35220
Putative catechol 1,2-dioxygenase.
 
 
 0.980
NFA_35200
Putative transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
   
 0.887
NFA_35180
Putative CoA transferase B subunit.
  
  
 0.578
NFA_35190
Putative CoA transferase A subunit.
  
  
 0.564
NFA_28450
Putative ring-cleavage dioxygenase large subunit.
 
  
 0.537
fadA7
Putative acyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.528
NFA_35240
Putative hydrolase.
     
 0.506
dnaB
Putative replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
    0.498
NFA_22290
Cytochrome P450 monooxygenase.
  
     0.493
Your Current Organism:
Nocardia farcinica
NCBI taxonomy Id: 247156
Other names: N. farcinica IFM 10152, Nocardia farcinica IFM 10152, Nocardia farcinica str. IFM 10152, Nocardia farcinica strain IFM 10152
Server load: low (32%) [HD]