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gll2708 protein (Gloeobacter violaceus) - STRING interaction network
"gll2708" - RNA polymerase ECF-type (group 3) sigma factor in Gloeobacter violaceus
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gll2708RNA polymerase ECF-type (group 3) sigma factor (189 aa)    
Predicted Functional Partners:
gll2707
Hypothetical protein (197 aa)
 
          0.822
gll1739
RNA polymerase sigma factor RpoE (214 aa)
   
     
  0.786
glr2709
Site-specific DNA-methyltransferase (311 aa)
              0.629
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate (177 aa)
              0.554
glr1159
Hypothetical protein (241 aa)
 
 
      0.536
rpoC2
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1262 aa)
       
 
  0.499
rpoC1
DNA-directed RNA polymerase subunit gamma; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (608 aa)
       
 
  0.499
gsr2711
Hypothetical protein (91 aa)
              0.446
glr2712
Hypothetical protein (426 aa)
              0.446
glr0922
Nitrogen assimilation regulatory protein (845 aa)
     
   
  0.415
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
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