STRINGSTRING
gll3116 protein (Gloeobacter violaceus) - STRING interaction network
"gll3116" - Aminotransferase in Gloeobacter violaceus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gll3116Aminotransferase (392 aa)    
Predicted Functional Partners:
glsF
Ferredoxin-dependent glutamate synthase (1534 aa)
   
 
  0.915
gsl3115
Hypothetical protein (46 aa)
              0.856
gsl3117
Hypothetical protein (73 aa)
              0.752
thrA
Homoserine dehydrogenase (427 aa)
   
 
  0.704
gll3114
Chaperone protein (313 aa)
              0.643
gsl3113
Hypothetical protein (80 aa)
              0.642
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (444 aa)
 
   
  0.553
glr1017
Aspartate-semialdehyde dehydrogenase (322 aa)
   
 
  0.541
gll3111
Hypothetical protein (289 aa)
   
        0.536
gll3112
Heptosyltransferase (328 aa)
   
        0.532
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
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