STRINGSTRING
speA protein (Gloeobacter violaceus) - STRING interaction network
"speA" - Arginine decarboxylase in Gloeobacter violaceus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine (644 aa)    
Predicted Functional Partners:
gll3725
Hypothetical protein (281 aa)
   
  0.973
glr1681
Hypothetical protein (349 aa)
 
   
  0.958
argH
Argininosuccinate lyase (468 aa)
         
  0.806
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (102 aa)
       
      0.735
gll4071
Hypothetical protein (197 aa)
 
          0.684
glr1682
Hydratase (284 aa)
 
     
  0.530
glr1721
Hypothetical protein (363 aa)
 
     
  0.524
gsl4069
Hypothetical protein (88 aa)
              0.471
glr2943
Nitrilase-like protein (270 aa)
         
  0.468
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (444 aa)
         
0.443
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
Server load: low (17%) [HD]