STRINGSTRING
pds protein (Gloeobacter violaceus) - STRING interaction network
"pds" - Phytoene dehydrogenase in Gloeobacter violaceus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdsPhytoene dehydrogenase (560 aa)    
Predicted Functional Partners:
pys
Phytoene synthase (317 aa)
 
  0.995
gll3598
Hypothetical protein (669 aa)
   
 
  0.915
gll2484
Hypothetical protein (514 aa)
     
 
  0.905
gll0198
Bacterioopsin (298 aa)
 
     
  0.901
chlD
Mg chelatase subunit; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX (669 aa)
 
   
  0.859
gll2874
Hypothetical protein (507 aa)
 
     
  0.803
crtE
Geranylgeranyl pyrophosphate synthase (295 aa)
   
   
  0.796
chlG
Bacteriochlorophyll/chlorophyll a synthase (343 aa)
 
   
  0.775
gll0693
Hypothetical protein (518 aa)
   
          0.679
glr4058
Farnesyl-diphosphate farnesyltransferase (363 aa)
 
   
  0.663
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
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