STRINGSTRING
pspA protein (Gloeobacter violaceus) - STRING interaction network
"pspA" - Hypothetical protein in Gloeobacter violaceus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspAHypothetical protein (237 aa)    
Predicted Functional Partners:
glr0922
Nitrogen assimilation regulatory protein (845 aa)
     
 
  0.893
gll0897
Hypothetical protein (536 aa)
              0.659
glr2792
Hypothetical protein (225 aa)
   
        0.604
gsl4025
Hypothetical protein (98 aa)
   
        0.529
gll1742
Hypothetical protein (202 aa)
   
        0.514
glr1532
Two-component response regulator (139 aa)
   
 
      0.507
psbO
Photosystem II manganese-stabilizing polypeptide (258 aa)
   
   
  0.499
glr2231
Inner membrane protein translocase component YidC (369 aa)
   
 
  0.486
psaD
Photosystem I reaction centre subunit II; PsaD can form complexes with ferredoxin and ferredoxin- oxidoreductase in photosystem I (PS I) reaction center (144 aa)
   
   
  0.471
rpmC
50S ribosomal protein L29 (70 aa)
   
        0.467
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
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