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apcD protein (Gloeobacter violaceus) - STRING interaction network
"apcD" - allophycocyanin-B in Gloeobacter violaceus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apcDallophycocyanin-B (161 aa)    
Predicted Functional Partners:
apcE
Phycobilisome core-membrane linker protein (1155 aa)
   
   
  0.992
cpcT2
Hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins (202 aa)
 
     
  0.971
apcC
Phycobilisome small core linker polypeptide; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer (69 aa)
   
   
  0.959
apcB
Allophycocyanin beta subunit (161 aa)
   
 
0.950
glr1180
Hypothetical protein (392 aa)
 
          0.913
gsr1183
Hypothetical protein (70 aa)
              0.859
apcF
Phycobilisome core component (161 aa)
   
   
0.857
petJ
Cytochrome c553; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis (112 aa)
   
     
  0.856
cpcE
Phycocyanobilin lyase alpha subunit (247 aa)
   
     
  0.848
cpcT3
Hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins (203 aa)
   
     
  0.821
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
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