STRINGSTRING
cpcE protein (Gloeobacter violaceus) - STRING interaction network
"cpcE" - Phycocyanobilin lyase alpha subunit in Gloeobacter violaceus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpcEPhycocyanobilin lyase alpha subunit (247 aa)    
Predicted Functional Partners:
cpcF
Phycocyanobilin lyase alpha subunit (193 aa)
 
   
  0.999
cpcA
Phycocyanin alpha chain (162 aa)
 
   
  0.993
gvip155
Phycocyanin alpha chain (162 aa)
 
   
  0.993
cpcB
Phycocyanin beta chain (172 aa)
 
   
  0.992
gvip154
Phycocyanin beta chain (172 aa)
 
   
  0.992
gll3219
Phycocyanin-associated rod linker protein (219 aa)
 
   
  0.986
glr0950
Phycocyanin-associated rod linker protein (219 aa)
 
   
  0.986
gsr1267
Phycobilisome 8.9 KD linker polypeptide, phycocyanin-associated, rod (rod capping linker protein) (70 aa)
       
    0.970
apcC
Phycobilisome small core linker polypeptide; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer (69 aa)
   
     
  0.957
apcE
Phycobilisome core-membrane linker protein (1155 aa)
   
     
  0.956
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
Server load: low (7%) [HD]