STRINGSTRING
cmpA protein (Gloeobacter violaceus) - STRING interaction network
"cmpA" - Bicarbonate transport system substrate-binding protein in Gloeobacter violaceus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmpABicarbonate transport system substrate-binding protein (448 aa)    
Predicted Functional Partners:
cmpD
Bicarbonate transport system ATP-binding protein (269 aa)
 
  0.993
cmpB
Bicarbonate transport system permease (278 aa)
 
 
  0.992
cmpC
Bicarbonate transport system ATP-binding protein (666 aa)
 
 
0.974
nrtD
Nitrate/nitrite transport system ATP-binding protein (265 aa)
   
  0.946
nrtB
Nitrate/nitrite transport system permease (281 aa)
 
   
  0.878
gll0174
ABC transporter ATP-binding protein (262 aa)
   
  0.800
nrtC
Nitrate/nitrite transport system ATP-binding protein (655 aa)
 
   
0.766
narB
Nitrate reductase (692 aa)
 
   
  0.701
gll0958
Urea amidolyase (1202 aa)
         
  0.664
glr2085
Hypothetical protein (288 aa)
 
          0.573
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
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