STRINGSTRING
cmpB protein (Gloeobacter violaceus) - STRING interaction network
"cmpB" - Bicarbonate transport system permease in Gloeobacter violaceus
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmpBBicarbonate transport system permease (278 aa)    
Predicted Functional Partners:
cmpC
Bicarbonate transport system ATP-binding protein (666 aa)
 
 
  0.995
cmpD
Bicarbonate transport system ATP-binding protein (269 aa)
 
  0.994
cmpA
Bicarbonate transport system substrate-binding protein (448 aa)
 
 
  0.992
nrtC
Nitrate/nitrite transport system ATP-binding protein (655 aa)
   
  0.968
nrtA
Nitrate/nitrite transport system substrate-binding protein (427 aa)
 
   
  0.955
gll3956
NrtC-like protein (429 aa)
 
   
  0.955
nrtD
Nitrate/nitrite transport system ATP-binding protein (265 aa)
   
  0.948
gll0174
ABC transporter ATP-binding protein (262 aa)
   
  0.946
narB
Nitrate reductase (692 aa)
         
  0.731
gll3107
Hypothetical protein (321 aa)
 
   
  0.681
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
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