STRINGSTRING
ccmL protein (Gloeobacter violaceus) - STRING interaction network
"ccmL" - Carbon dioxide concentrating mechanism protein in Gloeobacter violaceus
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccmLCarbon dioxide concentrating mechanism protein (100 aa)    
Predicted Functional Partners:
ccmM
Carbon dioxide concentrating mechanism protein (668 aa)
     
 
  0.998
gll2095
Carbon dioxide concentrating mechanism protein CcmK-like protein (113 aa)
 
     
  0.995
gll2096
Carbon dioxide concentrating mechanism protein CcmK-like protein (102 aa)
 
     
  0.992
ccmO
Carbon dioxide concentrating mechanism protein (245 aa)
 
     
  0.977
ccmN
Carbon dioxide concentrating mechanism protein (201 aa)
 
     
  0.941
rbcS
Ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit (106 aa)
     
 
  0.873
cbbL
Ribulose bisophosphate carboxylase; RuBisCO catalyzes two reactions- the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site (474 aa)
           
  0.797
gll2173
Ferripyochelin binding protein (171 aa)
     
 
  0.692
ecaB
Periplasmic beta-type carbonic anhydrase; Reversible hydration of carbon dioxide (234 aa)
           
  0.682
glr0945
Carbonate dehydratase; Reversible hydration of carbon dioxide (210 aa)
           
  0.682
Your Current Organism:
Gloeobacter violaceus
NCBI taxonomy Id: 251221
Other names: G. violaceus, G. violaceus PCC 7421, Gloeobacter, Gloeobacter violaceus, Gloeobacter violaceus ATCC 29082, Gloeobacter violaceus PCC 7421, Gloeobacter violaceus str. PCC 7421, Gloeobacter violaceus strain PCC 7421, Gloeobacterales, Gloeobacterales Cavalier-Smith 2002, Gloeobacteria, Gloeobacteria Cavalier-Smith 2002
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